transforms
LinearTransform
Bases: Transform
Class for linear transformations.
The transformation is defined as y = slope * x + intercept.
Attributes:
Name | Type | Description |
---|---|---|
slope |
float
|
The slope of the linear transformation. |
intercept |
float
|
The intercept of the linear transformation. |
Source code in gallifrey/inference/transforms.py
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__init__(slope, intercept)
Initializes the LinearTransform object.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
slope
|
ScalarFloat
|
The slope of the linear transformation. |
required |
intercept
|
ScalarFloat
|
The intercept of the linear transformation. |
required |
Source code in gallifrey/inference/transforms.py
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apply(x)
Applies the linear transformation to input x.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
x
|
Float[ArrayLike, "..."]
|
The input data. |
required |
Returns:
Type | Description |
---|---|
Float[jnp.ndarray, "..."]
|
The transformed data. |
Source code in gallifrey/inference/transforms.py
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apply_mean(mean_val)
Applies the linear transformation to a mean value.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
mean_val
|
Float[ArrayLike, '...']
|
The mean value to be transformed. |
required |
Returns:
Type | Description |
---|---|
Float[ndarray, '...']
|
The transformed mean value. |
Source code in gallifrey/inference/transforms.py
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apply_mean_var(mean_val, var_val)
Applies the linear transformation to mean and variance values.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
mean_val
|
Float[ArrayLike, '...']
|
The mean value to be transformed. |
required |
var_val
|
Float[ArrayLike, '...']
|
The variance value to be transformed. |
required |
Returns:
Type | Description |
---|---|
tuple[Float[ndarray, '...'], Float[ndarray, '...']]
|
A tuple containing the transformed mean and variance values. |
Source code in gallifrey/inference/transforms.py
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apply_var(var_val)
Applies the linear transformation to a variance value.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
var_val
|
Float[ArrayLike, '...']
|
The variance value to be transformed. |
required |
Returns:
Type | Description |
---|---|
Float[ndarray, '...']
|
The transformed variance value. |
Source code in gallifrey/inference/transforms.py
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from_data_range(data, lo, hi)
classmethod
Creates a LinearTransform instance such that data is scaled to [lo, hi].
NaN values are ignored in the calculation.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
data
|
Float[ArrayLike, "..."]
|
The input data. |
required |
lo
|
ScalarFloat | ScalarInt
|
The lower bound of the desired range. |
required |
hi
|
ScalarFloat | ScalarInt
|
The upper bound of the desired |
required |
Returns:
Type | Description |
---|---|
LinearTransform
|
A LinearTransform instance with slope and intercept such that data is scaled to [lo, hi]. |
Raises:
Type | Description |
---|---|
ValueError
|
If the input data contains less than 2 non-NaN values. |
Source code in gallifrey/inference/transforms.py
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from_data_width(data, width)
classmethod
Creates a LinearTransform instance such that the width of the data is scaled to the given width, i.e., the data is scaled to [-width/2, width/2].
NaN values are ignored in the calculation.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
data
|
Float[ArrayLike, "..."]
|
The input data. |
required |
width
|
ScalarFloat | ScalarInt
|
The desired width of the data. |
required |
Returns:
Type | Description |
---|---|
LinearTransform
|
A LinearTransform instance with slope and intercept such that the data is scaled to [-width/2, width/2]. |
Raises:
Type | Description |
---|---|
ValueError
|
If the input data contains less than 2 non-NaN values. |
Source code in gallifrey/inference/transforms.py
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unapply(x)
Unapplies the linear transformation to input x.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
x
|
Float[ArrayLike, "..."]
|
The (reverse) transformed data. |
required |
Returns:
Type | Description |
---|---|
Float[jnp.ndarray, "..."]
|
The un-transformed data. |
Source code in gallifrey/inference/transforms.py
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unapply_mean(mean_val)
Unapplies the linear transformation to a mean value.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
mean_val
|
Float[ArrayLike, '...']
|
The mean value to be un-transformed. |
required |
Returns:
Type | Description |
---|---|
Float[ArrayLike, '...']
|
The un-transformed mean value. |
Source code in gallifrey/inference/transforms.py
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unapply_mean_var(mean_val, var_val)
Unapplies the linear transformation to mean and variance values.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
mean_val
|
Float[ArrayLike, '...']
|
The mean value to be un-transformed. |
required |
var_val
|
Float[ArrayLike, '...']
|
The variance value to be un-transformed. |
required |
Returns:
Type | Description |
---|---|
tuple[Float[ArrayLike, '...'], Float[ArrayLike, '...']]
|
A tuple containing the un-transformed mean and variance values. |
Source code in gallifrey/inference/transforms.py
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unapply_var(var_val)
Unapplies the linear transformation to a variance value.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
var_val
|
Float[ArrayLike, '...']
|
The variance value to be un-transformed. |
required |
Returns:
Type | Description |
---|---|
Float[ndarray, '...']
|
The un-transformed variance value. |
Source code in gallifrey/inference/transforms.py
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LogTransform
Bases: Transform
Class for log transformations.
The transformation is defined as y = log(x).
Source code in gallifrey/inference/transforms.py
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apply(x)
Applies the log transformation to input x.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
x
|
Float[ArrayLike, '...']
|
The input data. |
required |
Returns:
Type | Description |
---|---|
Float[ndarray, '...']
|
The transformed data. |
Source code in gallifrey/inference/transforms.py
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unapply(x)
Unapplies the log transformation to input x.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
x
|
Float[ArrayLike, '...']
|
The (reverse) transformed data. |
required |
Returns:
Type | Description |
---|---|
Float[jnp.ndarray, "..."]
|
The un-transformed data. |
Source code in gallifrey/inference/transforms.py
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unapply_mean_var(mean_val, var_val)
Unapplies the log transformation to mean and variance values.
Parameters:
Name | Type | Description | Default |
---|---|---|---|
mean_val
|
Float[ArrayLike, '...']
|
The mean value to be un-transformed. |
required |
var_val
|
Float[ArrayLike, '...']
|
The variance value to be un-transformed. |
required |
Returns:
Type | Description |
---|---|
tuple[Float[ndarray, '...'], Float[ndarray, '...']]
|
A tuple containing the un-transformed mean and variance values. |
Source code in gallifrey/inference/transforms.py
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Transform
Bases: ABC
Abstract base class for data transformations.
Source code in gallifrey/inference/transforms.py
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__call__(x)
Applies the transformation to input.
Source code in gallifrey/inference/transforms.py
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apply(x)
abstractmethod
Applies the transformation to input.
Source code in gallifrey/inference/transforms.py
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apply_var(var_val)
abstractmethod
Applies the transformation to a variance value.
Source code in gallifrey/inference/transforms.py
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from_data_range(data, lo, hi)
abstractmethod
classmethod
Creates a Transform instance such that data is scaled to [lo, hi].
Source code in gallifrey/inference/transforms.py
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from_data_width(data, width)
abstractmethod
classmethod
Creates a Transform instance such that the width of the data is scaled to the given width.
Source code in gallifrey/inference/transforms.py
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unapply(x)
abstractmethod
Unapplies the transformation to input.
Source code in gallifrey/inference/transforms.py
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unapply_var(var_val)
abstractmethod
Unapplies the transformation to a variance value.
Source code in gallifrey/inference/transforms.py
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